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Oommen K Mathew, PhD
Associate Director - Bioinformatics, MedGenome Labs Pvt Ltd
About
Oommen K Mathew, PhD is a highly skilled computational biologist and data scientist with over 12 years of relevant experience. He is currently serving as the Senior Scientist (Computational Biology) and Head of Bioinformatics at AgriGenome Labs Pvt Ltd, where he leads the development of computational biology algorithms that work on multi-core/multi-processor environments and user-friendly web interfaces for applications and databases. Oommen holds a PhD in Bioinformatics from the National Center for Biological Sciences (NCBS) Bangalore, along with an MSc in Bioinformatics and Bachelors in Computer Applications (BCA). He is passionate about genomics, HPC algorithms, bioinformatics, computational biology, and next-generation sequence (NGS) data analysis, among other specialized areas. Oommen is an expert in genome assembly, annotation, protein structures, algorithm development, and bioinformatics software and database development. He has extensive experience in animal genomics, bacterial genomics, plant genomics, metagenomics, microbiome, biological data integration, structural bioinformatics, biological network analysis, and project management. Apart from his technical skills, Oommen is also a technology leader with expertise in Python, R, flask, Scipy, MySQL, HTML, CSS, Javascript, webservices, and APIs. He has mentored several professionals in the field and is known for his automation skills. In his free time, Oommen enjoys playing badminton and exploring new places. He is also a music enthusiast and spends his extra time listening to music. His research work has been published in several journals, and he has presented his work at various conferences. Oommen is a highly motivated individual who is committed to delivering high-quality work and is always looking for new challenges to enhance his skills.
Education
• national center for biological sciences
• mahatma gandhi university
Companies
• medgenome
• indian institute of information technology kottayam
• agrigenome labs pvt ltd
• ncbsbangalore
• braddock infotech
• rkc info tech
• macfast
Experience
14.8 Years
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Experience
Adjunct Faculty Member
indian institute of information technology kottayam | Kottayam Area, India
2019 - Present
Senior Scientist (Computational Biology) and Head of Bioinformatics
agrigenome labs pvt ltd | Kochi, Kerala, India
2021 - 2022
Senior Scientist (Computational Biology) and Site head
agrigenome labs pvt ltd | Kochi, Kerala, India
2020 - 2021
Skills
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AJAX
Algorithm Development
Algorithms
Annotation
Application Programming Interfaces (API)
Automation
Bioinformatics
BioPerl
BioPython
Biotechnology
Cascading Style Sheets (CSS)
Computational Genomics
CSS
Data Analysis
Data Integration
Data Science
Data Scientist
Database Development
Databases
differential gene expression
Flask
gene annotation
Gene Expression
gene prediction
Genome Analysis
Genome Assembly
Genomics
HTML
html
Human Genetics
illumina
Integration
JavaScript
Javascript
jQuery
Leadership
Life Sciences
Linux
Machine Learning
Metagenomics
MongoDB
Music
MySQL
pacbio
Perl
Plant Genetics
plant genomics
Project Management
Protein Structure
Protein Structure Prediction
Protein-protein Interactions
Python
python-flask
R
Research Scientist
RNAseq
RNAseq Analysis
scipy
Shell Scripting
SQL
transcriptome
Transcriptomics
variant calling
Web
Web Applications
Web Services
Contact Details
Email (Verified)
oomXXXXXXXXXXXXXomMobile Number
+91XXXXXXXX22Education
national center for biological sciences
Doctor of Philosophy (PhD)
2012 - 2017
mahatma gandhi university
MSc Bioinformatics
2002 - 2004
mahatma gandhi university
BCA
1999 - 2002
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